Scaffold Ga0211628_1020709

Overview

Basic Information

• Taxon OID: 3300020311
• Scaffold ID: Ga0211628_1020709
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX556071-ERR599171)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1142
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0263
  • Long. (^o): 4.6977
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018365	Metagenome / Metatranscriptome	235	N
F055199	Metagenome	139	N
F076598	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211628_10207092	F055199	AGGA	MTPDEKFITAILTQAVEDSAYMGKRPRYLKHKMDAIDWILNKDSEHHWSFLDYCTMIGLSPSKIQNKVRIHLNPKLSKQQQSIMKGI
Ga0211628_10207094	F076598	GGAGG	MSIDDFQDPMNDVLADNLVEVIATMTEEQRDLFVKTFIRKWPMLASKISFNIDCTLQEVTSVN
Ga0211628_10207095	F018365	N/A	TKRKENYIMKLQFNNVPDILDFIKNPENKDALLLIEMAIKEARKGSFANFKVGDHVIFGRTNGRKRPGVIVKTNPARAVIKDTNLGGTWRVPYSLMEAA