Scaffold Ga0211515_1001835

Overview

Basic Information

• Taxon OID: 3300020310
• Scaffold ID: Ga0211515_1001835
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX556067-ERR598950)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6123
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016003	Metagenome / Metatranscriptome	250	Y
F095497	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211515_10018354	F095497	N/A	MEPSLPHPSVKKHLQQGVDFSNEILNAIEEITQKYNVHVSQSVEMGYFYKLDKSMTYACRNLVEYKSRHKKLLKKYEHSYPK
Ga0211515_10018356	F016003	N/A	MLKSIWKLCENGELGELKKRRNEIDEIIEDIPNDGDDMREEEDDLSFAVAFCKDHDTGLEMYKYLYEECNYPRHCEYNAMVGAAASRNARLINYMYNNIDEHEKAIFIGDLDEQLSMTDHPNPNIFMEYALFELNN