Scaffold Ga0211681_1012830

Overview

Basic Information

• Taxon OID: 3300020309
• Scaffold ID: Ga0211681_1012830
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1494
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F068119	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211681_10128302	F001334	GGA	MMKFSEYLQTYADDSIEQVMDGEWILKSQATWKAVDNNDNTIEIHNDGHDPELNGESWTVHNNSFAPKAFAYFCKEFIQKVKPSELTHGRTRLYTKT
Ga0211681_10128303	F068119	GGA	MAEQDSILKLNTDIQTLKIKDEYRTKELDALMKKLDASTSNLNSLSENIGRLLAAQDVNKMTDNEFREEMKILHSRIGDLQDKMNTMVERTETRMNSDINLIYTKLESLERWRWITIGAATLVAWLLTNVIPKVLP