Scaffold Ga0211681_1006151

Overview

Basic Information

• Taxon OID: 3300020309
• Scaffold ID: Ga0211681_1006151
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2354
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016211	Metagenome	249	Y
F039830	Metagenome / Metatranscriptome	163	Y
F066157	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211681_10061511	F066157	N/A	MWAIVLATMLATGEPKVPLIMSSYSTFNKCRQELIRVGAIGGYEPVVSPMVGYAVVKVTDEKTITAFCVKDMRGI
Ga0211681_10061512	F039830	GAGG	MWSSPLELYPVHVSPDLAPLGQSLLIEPSVNRVNAEYLVVQPSREPYGIPQEYTRRVWIC
Ga0211681_10061514	F016211	AGGA	MNDRELTAAEKNEIAELAADKAYERFYLAVGKSVTKKILWITSAVLLASWLYFKEGTF