Scaffold Ga0211681_1000983

Overview

Basic Information

• Taxon OID: 3300020309
• Scaffold ID: Ga0211681_1000983
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8705
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038863	Metagenome / Metatranscriptome	165	Y
F071649	Metagenome / Metatranscriptome	122	Y
F079229	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211681_100098311	F071649	AGGA	VNNYTTDAQLDAQGLKHEEWLEDSMSAQRAMFNTARAKGVSIMAWKDTEFHDEHHYIVMAQNHKLEFVTWTWANGGFHNGHYYNDNEMQAWADYKERT
Ga0211681_100098317	F038863	GAG	MYKMYDYKCTLGHINEHMVKGSPDTQKCKSCSALATRQLSSPRSSLEPFSGDFAGATLKWVKDHERGRVQAEKANS
Ga0211681_10009833	F079229	AGGA	MDILEKLDAVQYDFNFQHAITTNDADLLVASLSDHGVLITIAKANELIVNLKKGGASYDN