Scaffold Ga0211681_1000392

Overview

Basic Information

• Taxon OID: 3300020309
• Scaffold ID: Ga0211681_1000392
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15494
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061294	Metagenome / Metatranscriptome	132	Y
F094427	Metagenome / Metatranscriptome	106	Y
F098084	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211681_100039211	F061294	AGGGGG	VQAIDTFESRCVDYQEDRITSATTALKVYLLSHKVVYSEVNYMVPEQPPTVEMLSIVVKDVCQGESSYTFVFEQMAARYLALVGDEGISPRVIFYYVSNVIISLLVLSRQNSQLSAEILIKIIQRFNFRDAVLRAGIEVIAEEVLRRCFLAINQPTSCLAKNASNIKRASN
Ga0211681_100039212	F094427	AGGAG	MDLNLLQPNISQHISSVEHLQVELLMLYGDSCDIGEGKHYTSLTRRGLKRLMKDMRHVQQHLQSLRSTYLIDADGATVLTVGHKYDHLAANRGASRASY
Ga0211681_100039215	F098084	GAG	MICIYPNYLAMRLLLVLLLLVSVTSYAGPPSQCDKPMHSDHIIYDCYGDWAVRHVFQRGVLKHKYSDATTVMDVGWFGSTEFQINRRQDGSIYYIIPSQIDRVEMTIGGQVFVAEQGPSAVFYGAITAPMLVAISQAESLINLLIYSEGQTIEASFSATGSNAALRWIGAID