NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211609_1022337

Scaffold Ga0211609_1022337


Overview

Basic Information
Taxon OID3300020307 Open in IMG/M
Scaffold IDGa0211609_1022337 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000408 (ERX555989-ERR599021)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1115
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5082Long. (o)37.9202Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006919Metagenome362Y
F032311Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0211609_10223371F006919GGAMKSFKQHLKEYVSYSTSDLVFMNNGQGSGSSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMARYMEGGIASGGGIVVEMEADVLVSAADDIMSQVDNKGRRWVEVSWFANAQRWGTGPKFAVVERELNDLIRNLVVKHLEPIIGNRARTEHEYVLWGNMKRELKDSKKLSLVIKDYFDGVEKIIKKNSEVMSSIFYGYAKSKRQTENSWDEQIVNNIEITKVHIIDFTTKAPSLQGQFDASKDLAKSNSWPMKVWDATETMDLEIYTRQVAQAEVRTR
Ga0211609_10223372F032311N/ADIKMRMKPNKPAFKFPSPTGEMMIHVFLRKMAPPAKKHTMAFNYQLEEK
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