Scaffold Ga0211609_1006647

Overview

Basic Information

• Taxon OID: 3300020307
• Scaffold ID: Ga0211609_1006647
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000408 (ERX555989-ERR599021)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2711
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5082
  • Long. (^o): 37.9202
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F013570	Metagenome / Metatranscriptome	270	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211609_10066471	F013570	N/A	MELEKIKKKREELMTNYNSLIDKRVELEKQLEVTNTDILTMRGAILLSNEFIEEEEKPEPKPLFPEKEVVVNDLDKEKDGGQKNK
Ga0211609_10066475	F001334	N/A	MIKFKEYLQLNADDSIEQIMSGEWIQKSRSTWKATDDEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARTRIYQSSSN
Ga0211609_10066476	F003285	GAGG	MPEQESINHLQTEVQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKLLHSRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLERWRWITIGIATAIAWLLTNIIPKFLDN