Scaffold Ga0211616_1015477

Overview

Basic Information

• Taxon OID: 3300020306
• Scaffold ID: Ga0211616_1015477
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1164
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211616_10154771	F006217	N/A	LLLAMVEEQNPIHKYCMSKHDHWTGRAACVQELRQTQRKMEVERLRQFLKENPHYKYPGMALPNGRIKPLDVCWGSDKTYGTSKERRC
Ga0211616_10154772	F029123	AGGAG	MSYEVWFGKDGKWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRRREHAS
Ga0211616_10154773	F027536	AGGAGG	MRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYEKDKEEGVLWVPNF
Ga0211616_10154774	F015102	N/A	MPVNDDDATQDKNTPFDDVSHWAGKLSGKNTDSSKRVDKRSTWRKVKSNFFSKELGVETKRKD