Scaffold Ga0211616_1000506

Overview

Basic Information

• Taxon OID: 3300020306
• Scaffold ID: Ga0211616_1000506
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6657
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018549	Metagenome / Metatranscriptome	234	Y
F087221	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211616_10005064	F087221	AGG	MSSDIRGLVDRTFREYLEPMDSLESYTYLTTGIGTTETTIAYDGDLLSIEEEDALDGGAIIEIGTELMYSKGLNAAGNTITVSRGARGTTAQTHSTNDLIKLSPAFPRINVFNAVKDQIENLYPTLYAIEEQTIAAATGYVALTGGDDNRIVAPLKAVSQYTNLSSGSETSVQFRGVAVELIDVPTTVTASGKVVQFSGVNNGVNVHCTFKKKFGEITNEDTTLSSIGLETEYEPIVMAGVAAQILAGRDIPSATAEYITESMALTTFPVNSATSIRNSLLQYQQVLINQARKDLRARFPEPVTLNSVVYPSA
Ga0211616_10005067	F018549	AGGAG	MSQNEEASVETNTGEDKNWKAIREENKTLKEELIKYQSQERDELFKQVGLDRSKGIGKAADQMYEGDTTADALKAFITEEFGEEVFGQQDSFRETVNAGQERLDNLAAQAQAVSGSPGIRDQIAAAQETGRVRDSIASKMKALNELEKK