Scaffold Ga0211616_1000009

Overview

Basic Information

• Taxon OID: 3300020306
• Scaffold ID: Ga0211616_1000009
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36776
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017658	Metagenome	239	Y
F033841	Metagenome / Metatranscriptome	176	N
F070220	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211616_100000914	F033841	AGG	MEELKPETIKIVTPNPTNFRYSYLVTPDEYKGVRKYKAECLIKKGTITKDEMKREVDAVEHIFGQLEGLLERWKVALKEHYPDRKFSLTKNKHGEPSLPYFLEDDYLVIRTSKKAGGVKQNGDVWTNPPVSFWHTDLTLMTEEEKKEYEKISPALEGQMSIKCSGYDAGANGVGIRCQPLQVIVRKHAEWTGSPDFEAEAQPSYEEKRTASSAADF
Ga0211616_10000097	F017658	GGAGG	MNFMEELEKETQKMLEQISIRKAEKTAVAKKRIAELKELIKLWEQDL
Ga0211616_10000099	F070220	AGGAGG	LKCTKCESLDVKVRETIYRKAELTKGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLTPN