Scaffold Ga0211513_1003017

Overview

Basic Information

• Taxon OID: 3300020305
• Scaffold ID: Ga0211513_1003017
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2602
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007226	Metagenome / Metatranscriptome	355	Y
F011629	Metagenome / Metatranscriptome	289	N
F095622	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211513_10030172	F095622	GAGG	MQYNTTLVKLAKTFLANKNVEVYSELTDGQGELGICVDVNNNRIWTDGNRGLWSTVAKGVKVRHANFLVTKWDDEEWSGGLAGNVHYDGSGEDGTWFDGGDVETALINKTKDKESDGMIYTDTAFLSNLQKYMVESCDFDLQLCEYLDFDYSEQGMQDDENVNLDVEMDGDFWLYVIAEMKREGIAHRHIGEADLIVEAVA
Ga0211513_10030173	F007226	GAGG	MQKLLNKITYYFLQRAYKQMWKSDNLQNADKIAEHEEDYYKYFVR
Ga0211513_10030174	F011629	N/A	MNIAHARKLLKLYKQHKGKNMLNTDEVKDLVRTRFGGTLKQVYLNKCYVNYKEIADKRNMAFYVDGDRFTNVDFNALAQEVGCKRVKLHAAFIRGMRDGCYLRLQQVQYDK