Scaffold Ga0211513_1000541

Overview

Basic Information

• Taxon OID: 3300020305
• Scaffold ID: Ga0211513_1000541
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6060
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F020709	Metagenome / Metatranscriptome	222	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211513_10005411	F020709	AGGAG	MTNIKTQDKTAFGRTLHYVTDPVYADALQTLTGKLTLTDKDIICLQLLGLEVNGVNYTNQLTIAGV
Ga0211513_10005414	F021511	GGAG	MQDYTNDAVKSIMADYTPLEVKALIHNHDESMFVHHQDPKDIVEFYGTYNEDIHHWLLDDSHAFEYYANAMAAYNYAQAKCKCEHERFALQQEYLKDVVYIFIATVCYDLAASHDMLDMTMEEVENYQLAKELQHAKTKLTVIDGGKK
Ga0211513_10005415	F019665	GGAGG	MPFNTYIDDKDMIPVLLSYDWIISHNTWTDCPYPTYAAIKKAYQHNGNATIFGEMM
Ga0211513_10005416	F019666	GGAG	MPHIYIPEVYISQDDYDMIQDNSIPIDAFVAARIRNDEMFVYIQETDCKYKRAQNYEWNDELQARIVSDYFSGNPDKRSTICDI