Scaffold Ga0211513_1000443

Overview

Basic Information

• Taxon OID: 3300020305
• Scaffold ID: Ga0211513_1000443
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6671
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_004
• Coordinates
  • Lat. (^o): 35.5571
  • Long. (^o): -6.5586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F004327	Metagenome / Metatranscriptome	443	Y
F007226	Metagenome / Metatranscriptome	355	Y
F095622	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211513_10004433	F007226	AGGAGG	LQKLLNRITLYFLNRAFTQMEQSGDLQNADDVAEHMEDYFTNFVK
Ga0211513_10004434	F095622	GAGG	MQYNTTLIKLAKTFLANKNVEVYFDEARTELSISVDVHNNRIWTDGERGLWSTVAKGVKVRHANFLVTKHDDDEEWSGGLAGTVHYDGSGEDGTWYDGGDEETALINKVKDKESDGMIYTDTAFLANLQKYMVEHCDFDEQLNEYLDFDYSEQGMQDDEYVNLDVEMDGDFWLHVIDEMKAEGVAHRQIGEEDLIITAVA
Ga0211513_10004435	F004327	GAGG	MADRKFIKIGTKVNTQWGEAKVTGIELCENGEKYGIDIDKIFVADKNRCTFDMDNGHWSYGYQIEVAS
Ga0211513_10004437	F003769	AGG	MQNFKTITKKTTTKVESVHVDVLYAVIENCYNSLQVVEADGTSASYFLNSANIFAQLQGVYAENCHNNYVSLESVMEVFANNITYYDEEYGLYESVVEKTALAKVKLQDYACLSN