Scaffold Ga0211513_1000095

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211513_1000095

Scaffold Ga0211513_1000095

Overview

Basic Information
Taxon OID	3300020305 Open in IMG/M
Scaffold ID	Ga0211513_1000095 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14329
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (37.84%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_004
Coordinates	Lat. (^o)	35.5571	Long. (^o)	-6.5586	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036278	Metagenome	170	N
F044551	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211513_100009520	F044551	N/A	MKPYLLYIFIGLVFLSLIRTTFKIDRNERNQRLQEELCKVDADYCIK
Ga0211513_100009527	F036278	GAGG	MTDPRGYQPEGVKYTFPDDDPYQEGNEVYYNMAEFLNDEELHQIWTIVGKACDREKIDTSGDQTLSVRVYDTIRSH

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