NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211513_1000003

Scaffold Ga0211513_1000003


Overview

Basic Information
Taxon OID3300020305 Open in IMG/M
Scaffold IDGa0211513_1000003 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72821
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (79.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010160Metagenome / Metatranscriptome307Y
F017912Metagenome / Metatranscriptome238Y
F022760Metagenome / Metatranscriptome213Y
F026719Metagenome / Metatranscriptome197Y
F034951Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211513_100000325F010160GGAGMIHTIQQLMDKVSAMHGLAVQAHREKYKTHTKEYDVDLVTHLVEQIQAMAGDIYNDRTPHPKLQAKKEKK
Ga0211513_100000372F026719N/AMLQSYDPYYRVIPNIISEQTKNELLAIALKPDAFVDISYKISFFKFPSTIQKFNKTGLNCVCQLLKVNESGSKIHKDKNRHNEFEGTYIPRQTVISFPLTENCGETWFYDESLNKVASINYEGYGAILNTGGHYHNVYFTENNDTRIVFQLCFEETYEDVCQIFEKKLKGKTL
Ga0211513_100000374F017912AGGMWYNPKHLQEAKAKAGREDAGYWWHFKLAIAEFFFLLGVTIGSLIHAIFPWVLDFKLLEWRINRLKELKKKLPDDPQLKKVNFDE
Ga0211513_100000375F022760N/AMIEVKIITDDLISKLETFCEKAKELGYVNNSSLKEMRFEKTKEWGEYFCALKNGNIIAVAGCHPLPEVGEDAWRILFRGCELPHDSNFKGLGKGDWNSVTQREFIPRFIDYCPTDKLYITTNIYREHSNGKAARNHRLMGLLARQGILDKHCDMELYNCEQTIWHLNINEYNRRRSLLKGNYVVQS
Ga0211513_10000039F034951AGGAMENFINIVFDTKQEVDDIVVSEVATSASNALLEEETGYELYDTNDGKTVLTVETHVQLDEQESNNVAEKIANKLFDLGYNNFDIEVSV

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