Scaffold Ga0211513

Basic Information
Taxon OID	3300020305 Open in IMG/M
Scaffold ID	Ga0211513_1000003 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020305 Open in IMG/M

Scaffold ID

Ga0211513_1000003 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	72821
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (79.38%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

72821

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

77 (79.38%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_004
Coordinates	Lat. (^o)	35.5571	Long. (^o)	-6.5586	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_004

Coordinates

Lat. (^o)

35.5571

Long. (^o)

-6.5586

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010160	Metagenome / Metatranscriptome	307	Y
F017912	Metagenome / Metatranscriptome	238	Y
F022760	Metagenome / Metatranscriptome	213	Y
F026719	Metagenome / Metatranscriptome	197	Y
F034951	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211513_100000325	F010160	GGAG	MIHTIQQLMDKVSAMHGLAVQAHREKYKTHTKEYDVDLVTHLVEQIQAMAGDIYNDRTPHPKLQAKKEKK
Ga0211513_100000372	F026719	N/A	MLQSYDPYYRVIPNIISEQTKNELLAIALKPDAFVDISYKISFFKFPSTIQKFNKTGLNCVCQLLKVNESGSKIHKDKNRHNEFEGTYIPRQTVISFPLTENCGETWFYDESLNKVASINYEGYGAILNTGGHYHNVYFTENNDTRIVFQLCFEETYEDVCQIFEKKLKGKTL
Ga0211513_100000374	F017912	AGG	MWYNPKHLQEAKAKAGREDAGYWWHFKLAIAEFFFLLGVTIGSLIHAIFPWVLDFKLLEWRINRLKELKKKLPDDPQLKKVNFDE
Ga0211513_100000375	F022760	N/A	MIEVKIITDDLISKLETFCEKAKELGYVNNSSLKEMRFEKTKEWGEYFCALKNGNIIAVAGCHPLPEVGEDAWRILFRGCELPHDSNFKGLGKGDWNSVTQREFIPRFIDYCPTDKLYITTNIYREHSNGKAARNHRLMGLLARQGILDKHCDMELYNCEQTIWHLNINEYNRRRSLLKGNYVVQS
Ga0211513_10000039	F034951	AGGA	MENFINIVFDTKQEVDDIVVSEVATSASNALLEEETGYELYDTNDGKTVLTVETHVQLDEQESNNVAEKIANKLFDLGYNNFDIEVSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211513_1000003

Overview

Ecosystem & Geography

Associated Families

Sequences