Basic Information | |
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Taxon OID | 3300020305 Open in IMG/M |
Scaffold ID | Ga0211513_1000003 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 72821 |
Total Scaffold Genes | 97 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 77 (79.38%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_004 | |||||||
Coordinates | Lat. (o) | 35.5571 | Long. (o) | -6.5586 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010160 | Metagenome / Metatranscriptome | 307 | Y |
F017912 | Metagenome / Metatranscriptome | 238 | Y |
F022760 | Metagenome / Metatranscriptome | 213 | Y |
F026719 | Metagenome / Metatranscriptome | 197 | Y |
F034951 | Metagenome / Metatranscriptome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211513_100000325 | F010160 | GGAG | MIHTIQQLMDKVSAMHGLAVQAHREKYKTHTKEYDVDLVTHLVEQIQAMAGDIYNDRTPHPKLQAKKEKK |
Ga0211513_100000372 | F026719 | N/A | MLQSYDPYYRVIPNIISEQTKNELLAIALKPDAFVDISYKISFFKFPSTIQKFNKTGLNCVCQLLKVNESGSKIHKDKNRHNEFEGTYIPRQTVISFPLTENCGETWFYDESLNKVASINYEGYGAILNTGGHYHNVYFTENNDTRIVFQLCFEETYEDVCQIFEKKLKGKTL |
Ga0211513_100000374 | F017912 | AGG | MWYNPKHLQEAKAKAGREDAGYWWHFKLAIAEFFFLLGVTIGSLIHAIFPWVLDFKLLEWRINRLKELKKKLPDDPQLKKVNFDE |
Ga0211513_100000375 | F022760 | N/A | MIEVKIITDDLISKLETFCEKAKELGYVNNSSLKEMRFEKTKEWGEYFCALKNGNIIAVAGCHPLPEVGEDAWRILFRGCELPHDSNFKGLGKGDWNSVTQREFIPRFIDYCPTDKLYITTNIYREHSNGKAARNHRLMGLLARQGILDKHCDMELYNCEQTIWHLNINEYNRRRSLLKGNYVVQS |
Ga0211513_10000039 | F034951 | AGGA | MENFINIVFDTKQEVDDIVVSEVATSASNALLEEETGYELYDTNDGKTVLTVETHVQLDEQESNNVAEKIANKLFDLGYNNFDIEVSV |
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