Scaffold Ga0211692_1026733

Overview

Basic Information

• Taxon OID: 3300020303
• Scaffold ID: Ga0211692_1026733
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 746
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F020795	Metagenome / Metatranscriptome	222	Y
F051476	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211692_10267331	F020795	AGGA	MRTATLEVLNEGELIFGTRTNGSYFVREYEDNEEVAGSFFNTEEEAKAYIETLNEK
Ga0211692_10267332	F001048	GAG	MKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVNKRVRWELGSEGYSNWDACGYKDIPTLAKAYRIS
Ga0211692_10267333	F051476	N/A	IEVEMTYWKVKLIIKEKLHKSELFESLAKARLWSMREAKLTVADRLFNDTDIVAEITSHEFA