NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211692_1020438

Scaffold Ga0211692_1020438


Overview

Basic Information
Taxon OID3300020303 Open in IMG/M
Scaffold IDGa0211692_1020438 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.3455Long. (o)-43.2924Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003292Metagenome / Metatranscriptome495Y
F040139Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0211692_10204382F003292N/AMKYLVSCMIIGLFFLFAVGCDGVKHIIQIEEPLDHTQGDDGGKLKYKIIFGDREQKE
Ga0211692_10204385F040139N/AMHTKEKENSGTCCQVENAKENAEQLTYEHHAKVGPAPKETNE

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