Scaffold Ga0211692_1012715

Overview

Basic Information

• Taxon OID: 3300020303
• Scaffold ID: Ga0211692_1012715
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1173
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007052	Metagenome / Metatranscriptome	359	Y
F012919	Metagenome	276	Y
F045361	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211692_10127151	F007052	AGGAG	MERNETYFVARLIKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRMTNVGDICVEIDKHFFGYEISSEELLKNSVRVV
Ga0211692_10127152	F045361	AGTAGG	VRKGFSFILKTQMRKKMVRMLMMMGLVVGAYVAGYNGVTHVEVIEFVDWSMANVENFNDYVDGMMEYAENFRNDVEGVL
Ga0211692_10127154	F012919	GGAG	MKISRKKLNLEISKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTVSDTPTTEQQISYVEKNSL