Scaffold Ga0211692_1012649

Overview

Basic Information

• Taxon OID: 3300020303
• Scaffold ID: Ga0211692_1012649
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1177
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211692_10126492	F022754	GAG	MLVIPSPHKLVNWSVNQIPTQIQIIHETGLEVSYNATPVSCSFKPRHDKEMVFRSPNNRCYSVYDLSSPRFVRHPDYWYKVELPKPPLVNLGE
Ga0211692_10126493	F002078	AGGAG	MDIATIFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0211692_10126494	F015741	N/A	MGCSLPLVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESSPPEIVSEDLSKVSRNNDIYREVCKEHKSMIDKMKDKADRVIDKTLTATEEEDG