Scaffold Ga0211692_1009080

Overview

Basic Information

• Taxon OID: 3300020303
• Scaffold ID: Ga0211692_1009080
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1443
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y
F008561	Metagenome / Metatranscriptome	331	Y
F032811	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211692_10090801	F008561	GAG	MKFDELIEHYENAIGFESTVKGVPMSEENLELCKKFVTDIHDCPRQDVRVMYRGPRTSYAHATLRKDARSFDVYHTPRYR
Ga0211692_10090802	F004768	GAGG	MKTATIEILEEGETIFGSPTNGEFFVRKYEDGEEMGGGFFKTMAEAETCVREYQQLNG
Ga0211692_10090804	F032811	N/A	MKIAQGCYFEQEEDEPIDPIRGRKTSANIEEPNYRRKSFLEDIPDNYSERIMRLKGTARSVPAPEREVQTPEGFAITIAYNKSGYQVIPKEDLKI