Scaffold Ga0211692_1002940

Overview

Basic Information

• Taxon OID: 3300020303
• Scaffold ID: Ga0211692_1002940
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3027
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F007055	Metagenome / Metatranscriptome	359	Y
F007771	Metagenome / Metatranscriptome	345	Y
F010477	Metagenome / Metatranscriptome	303	Y
F026028	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211692_10029403	F000615	GAG	MCRIRCFYECSDGDMGFAEMVLSYEDDIAGFVKHWSTGGRMVITEHIDLV
Ga0211692_10029404	F007771	N/A	METIIHAKTIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYIFDGVAMIEEDTKITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIETEKENG
Ga0211692_10029405	F010477	GGA	MRIQLQIRYLVFVPYLIFVGMMGGNVLVEAIVIGLALAMYDFLFDNG
Ga0211692_10029406	F026028	AGGAG	MSICSNCYHRIRHRNKIDVGHWWNNPPDHVYVCSDKCKEEIEKKVADGTWMIMRPFPKTEKEDDGLPTALTDKQFGTE
Ga0211692_10029408	F007055	GAG	MTVIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGAGESKMLNSYGIQVLDHQGNKPDKDYMKKHRPPHRVYPTRMYKNNGGWMVWLTCDIKGRNEGL