Scaffold Ga0211692_1001313

Overview

Basic Information

• Taxon OID: 3300020303
• Scaffold ID: Ga0211692_1001313
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006198	Metagenome / Metatranscriptome	379	Y
F011620	Metagenome / Metatranscriptome	289	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211692_10013133	F011620	GGA	MIDKIIQVVLKFFGKEKPEPPTEENNESLEALERVEALDKIGESS
Ga0211692_10013136	F006198	GGA	MEVELDVDCNNCNAKYTMMYEADDIRSRQEEHAFHCSFCGILMEPYYDEFFEED