Scaffold Ga0211650_1015401

Overview

Basic Information

• Taxon OID: 3300020301
• Scaffold ID: Ga0211650_1015401
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX556086-ERR598997)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1239
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0596
  • Long. (^o): -84.553
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004842	Metagenome / Metatranscriptome	421	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211650_10154013	F004842	N/A	IPDIGAIKKAIKEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVAINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTAIKFIRNLFNSIYPKTIFQKSLIRIIFFKKLFKNRFFLEYP