NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211650_1001088

Scaffold Ga0211650_1001088


Overview

Basic Information
Taxon OID3300020301 Open in IMG/M
Scaffold IDGa0211650_1001088 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX556086-ERR598997)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7283
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034753Metagenome174Y
F039094Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0211650_100108812F039094AGGMIHETNVSLNVQEVGILLSALKLLEFEDECFIAKDYGSVCSLYNRLKDIYDGMDSTICGSKEDPICEPSY
Ga0211650_100108821F034753GAGGMRDILIEAIKSCQQVSYWSGSLFEEATQASTDGKGKIGEFFIHRIIKDYTGIPVQWDKDSNTSNDDGVYDLFWYLHNGKKVRVEVKTSGRTVSNGRPIGWQHENVYFSDNKWDKLIFFDYDRNDVMFITIVDYDMVVKDNTMDLSIFGKKAHQRKNEEGKAKVDFSMKSIRKGIDAGVTFEYDFNSTHPEELALFLLKKLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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