Scaffold Ga0211662_1067185

Overview

Basic Information

• Taxon OID: 3300020300
• Scaffold ID: Ga0211662_1067185
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555977-ERR598981)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 560
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9057
  • Long. (^o): -96.155
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y
F024883	Metagenome	204	Y
F034604	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211662_10671851	F034604	N/A	TIKEITIEGEKIIIDFAGAPFWKYYVLQLYFLTCHRKRLIDYIK
Ga0211662_10671852	F004768	AGG	MKTATIEILEEGETIFGSRTNGDYFVRRYEDGEEMGGGFFKTMEEAETEVREYQKTEI
Ga0211662_10671853	F024883	N/A	MKSKKRKQSRIWKEVLETVGAFLINPDYAPDPEHVQLYITTKDGGIVELHIGHDDEGEILKTFDSFDSEDDLEEQRIMERM