Basic Information | |
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Taxon OID | 3300020300 Open in IMG/M |
Scaffold ID | Ga0211662_1022283 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555977-ERR598981) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1262 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_100 | |||||||
Coordinates | Lat. (o) | -12.9057 | Long. (o) | -96.155 | Alt. (m) | Depth (m) | 177 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013775 | Metagenome | 268 | Y |
F015023 | Metagenome | 258 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211662_10222831 | F015023 | N/A | MKTTFKHIDLNDSVDDFMNHLNNNMDKPDGYSYELNTRGSKYFKVIMNTRGSRSVYCFINKRNGEILKAAGWSAPAKGSRGSVLVPDSYTNSDWSGGWLYKIFGNVYNTIG |
Ga0211662_10222834 | F013775 | AGGA | MVEKRQYETVKEFAKDYRSEIVPMLKSKGFTLRINTSKGSYYYDGRMNFVIKGVPSNFYVWTHEYNRYSKTEKSQKLLGVIRDRVNSILVESNLDVDMNFDYDRNVRYKPIPDGWDDERNSXL |
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