NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211615_1003536

Scaffold Ga0211615_1003536


Overview

Basic Information
Taxon OID3300020299 Open in IMG/M
Scaffold IDGa0211615_1003536 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2001
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001918Metagenome617N

Sequences

Protein IDFamilyRBSSequence
Ga0211615_10035362F001918GAGGMKIALCFAGQPRFINLMNFDNLTDGHDVTTYAHFWWDDSYRGDMFAWNSELKYPDDYDPIDHFEHKMKPKQLVWEEYPKFDMSPYKMVSQMEFPLSDEVVRQSIYRQKCQWTSVKKSVDLVDDEFDIVIRMRTDLEFHDKVDLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLKVFDDFYADGIRHMHDLVIETLRTLQIPHAVLDLKAWMMDRSKIK

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