Scaffold Ga0211615_1002592

Overview

Basic Information

• Taxon OID: 3300020299
• Scaffold ID: Ga0211615_1002592
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2271
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F057382	Metagenome	136	N
F073646	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211615_10025921	F057382	N/A	MSKNDLTKAELRQLIDCIVFFQLGARVKELKTIKFKLKNQLKEMESNEQK
Ga0211615_10025923	F073646	GGAG	MLQSEYLDIAIELYEIYSDNYIHHKKWLTARELAKLKGGPGLIAKVKKKQGLLSELKPIFADYVNTQRQYRSCNTPQEWTCKFDNWLFNEYEFTSEELDELQADRIRQVRRETFKEFTNGGSIRTRTD
Ga0211615_10025926	F012584	N/A	MKLKPALPENVFKLSEDSLPTQSDLDPYGKVMVYRKDVGWSIIQLTDIKQFLSMKHTHWTFTPETP
Ga0211615_10025927	F016820	N/A	MTKKEFSYVVIFTSGEKFEEIHGVYKDVEGACYGARSALSTLFPKHGDEAKIIRCEIISTEEAKNQFEDSKPKDLFEKCDDGYCPLPTQQVS
Ga0211615_10025928	F006793	N/A	MTNLRSTNEEKEQRINYAADQLAKGERSMVIVKKLAKKYSVSPQQARDYVREARKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARGQENLKEQGKATGGMVKMVSMLTTIDQIGSWDDAYNNHLFKNFSEAKKKVKHSDLDALDNDLPEGEIPF