Scaffold Ga0211615_1001654

Overview

Basic Information

• Taxon OID: 3300020299
• Scaffold ID: Ga0211615_1001654
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2789
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061923	Metagenome	131	Y
F101344	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211615_10016543	F101344	AGG	MRFHTLTDNTSHYLRGANNFPYGAPPVLEDNEMDYGEPTWDDVPDKFINFEDDACKCFSCGGWFPTEDCVINHDEEHKGVPVCDTCAEGRIM
Ga0211615_10016545	F061923	AGTAG	MRPETRANLGKQGTEIARVRGTLQGLAEAWGADVKFLQTRIADAEEKLTKIQNALAEIEWSEEVDWMGKLNE