Scaffold Ga0211615_1000175

Overview

Basic Information

• Taxon OID: 3300020299
• Scaffold ID: Ga0211615_1000175
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8000
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043887	Metagenome	155	Y
F060050	Metagenome	133	Y
F091884	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211615_100017515	F060050	AGGTGG	MTDTQKLERLAYLADLPYCKHTSEDWEEELRLECELQDHPQYISFLNP
Ga0211615_100017516	F091884	AGG	MCYTGLRRCYTFNCRLLISINKDMANSKSKKSTKKVEYKLQERQVIAFCWVGHGTYTWSIGYEPNIVHATKCVRKAKRDYGLKGWQIIPVSIFDIEDTEHWAFDGGTLVDTDKQDKESEAYKNGEIYNQWRGCPPLKKIEDLEVVS
Ga0211615_10001756	F043887	GAGG	MKEQTLLKIARYQCQLAELERQWWFEGLEDKFYRINYDRITNAIKELEND