NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211657_1065834

Scaffold Ga0211657_1065834


Overview

Basic Information
Taxon OID3300020298 Open in IMG/M
Scaffold IDGa0211657_1065834 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094411Metagenome / Metatranscriptome106N
F099879Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211657_10658342F094411GAGVKQSQDIQNSQAKLISLINRDYLTVKEVFKNTHTLRLTKYGKNLLSKQYDAYQFESPMLSAKNLINLLRKMNYPYYVDKKIIVLFTEKDAFVAKLAGAQGWLDGK
Ga0211657_10658343F099879AGGMANRNKRVEVPDTIMVTCTDNGQEVEVEYISQYNDTIRTSLQGIPLNFRHHRANIYVANAHGREFVMKL

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