Scaffold Ga0211657_1026780

Overview

Basic Information

• Taxon OID: 3300020298
• Scaffold ID: Ga0211657_1026780
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2771
  • Long. (^o): -85.2995
  • Depth (m): 480

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F056674	Metagenome / Metatranscriptome	137	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211657_10267801	F056674	N/A	MDSKKIVNEIKKGIPKYKHRGKYQMSLSGLIKALQKERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEDPITVAEFLKECEDSVGKSFITADHFDEFYKDHVMQINAPVWISTLGQASQKGIVDLVPTDGYIKLVTENIEKDPEEEEEDGSE
Ga0211657_10267803	F105355	AGAAGG	MEALNSCDNSDKLTLLLNIRQGTQSTTYSVSNLPDWYDMLGIFAIYGIVAMTIFYIGLWIGSRYII
Ga0211657_10267804	F052655	AGGAG	MTVLILVAGLAFGMFTYEPSWFDTRPHYYYLTYNSKSECQEAREMVKDKGTVCTDKHEMYKTK