Scaffold Ga0211657_1012933

Overview

Basic Information

• Taxon OID: 3300020298
• Scaffold ID: Ga0211657_1012933
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2086
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2771
  • Long. (^o): -85.2995
  • Depth (m): 480

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F036736	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211657_10129332	F015741	GGAG	MQLKQKFGIGLVCLMFSTGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYREVCKEHKSMMDKMKDKADRVIDKTLMATEEEEDG
Ga0211657_10129333	F002078	AGGAG	MDIAAMFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPILGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0211657_10129335	F013820	GGAG	MIATIISFIDKAMPGQKTYALMILGVGMTVCQMWGFHSFSQEAWGLLGIGGAATWKMGIDRGKPAVKK
Ga0211657_10129336	F036736	GAGG	MDKLNEMLIGTLAVMGAFITRRVFNNHDTLSERVTALEKVVLTKEDLNTIERNVEMIVSHLITKGKSDQ