Scaffold Ga0211657_1006439

Overview

Basic Information

• Taxon OID: 3300020298
• Scaffold ID: Ga0211657_1006439
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3291
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2771
  • Long. (^o): -85.2995
  • Depth (m): 480

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023453	Metagenome / Metatranscriptome	210	Y
F025145	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211657_10064392	F025145	N/A	VFYGIIVCTMEIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDLDESDRPFDIYYRDTPHPEHNNFYFGLYTDDEDRMMICKADTIENYTFGLISDEDEWVYSRSHHDFVETDSGYIDGGRRFIKRGGELDNQKHIVAKVVDGVFVTGEETE
Ga0211657_10064394	F023453	GGA	MRIGEITQSNTLYELEKWAKRNVPLLEDGSMDAERVSQTLLQKAINKFKKQPEPSEEKTQDMEQYMSKLEDKLGTEKVQKTTIKKFFGFFRAHPRMIGLGVMILMLLSPMLPSIAIIGLSLEKILSMVLAGLYAMDIASPGVKTSIEL