Scaffold Ga0211490_1002487

Overview

Basic Information

• Taxon OID: 3300020297
• Scaffold ID: Ga0211490_1002487
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5244
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2087
  • Long. (^o): 26.2932
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025520	Metagenome	201	Y
F058913	Metagenome	134	Y
F062820	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211490_100248711	F025520	N/A	MAIYEDYFVISTTSYIKSVPTKLDMEFKKELIDDNGDLKPHVEKIIDNVFYCGEQCINATLPTLFIEIEYKTSDGHYLISHEVFLYEEDYPNLKELEDYKNKFDFNFSSQVEPEVYEIVDAFHASQGCMCLSLGDY
Ga0211490_10024872	F058913	AGGAGG	MNLNKEEAKWLDDKWNDFYYYFQVEDMFEKDQKIYQSIGEKLSEVKQ
Ga0211490_10024876	F062820	AGGAG	MTTSTWKHINIGDICVHCGKNTSYGHSDMLFVDRIPADADLLDDDQNPIGVKEGFMCRECQYVPEDDFFHEDNVND