Scaffold Ga0211490_1002337

Overview

Basic Information

• Taxon OID: 3300020297
• Scaffold ID: Ga0211490_1002337
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5429
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2087
  • Long. (^o): 26.2932
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020716	Metagenome	222	Y
F027868	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211490_10023376	F027868	AGGA	MDYLALRIPADIDQKITAHTITDQPEPEEGGGYPFKGEEGAYELCSCRMIEIVPAAYTDKKNNHHLEGSLYCDEEGLLNGSAHNWRASQMRYWHMKPRAAQLIPEWRDWCHIAGDAAFVVPATDENLKIMETILDS
Ga0211490_10023379	F020716	AGGCGG	MSTARHCKNCGKKYYPKSYYSYPQFGWRTSDEVKLEYARFHSLGCMTDWLQRNKEAFANLVDNVSENVIQEDTNNI