NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211490_1002070

Scaffold Ga0211490_1002070


Overview

Basic Information
Taxon OID3300020297 Open in IMG/M
Scaffold IDGa0211490_1002070 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5886
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2087Long. (o)26.2932Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001918Metagenome617N
F002334Metagenome569N

Sequences

Protein IDFamilyRBSSequence
Ga0211490_10020703F001918GAGGMKIALCFAGQPRFINLMNFGNLTDGHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIDHFEQRMKPKQLVWEKYPKFDMSPYKMVSQMEFPLSDDIVRQSIYRQKCQWTSVKKAVDLVDEEFDIVIRMRTDLEFHDRVPLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLKVFDDFYADGIRHMHDLVIETLKSLQIPHSVLDLKAWMMDRSKIK
Ga0211490_10020705F002334GGAMTLGVFHQVYTRPKATEEAIKSFRQFHPDTPYVLICDGGKSFHRIAKRYDCLYVHEEDNLGYRDHTHASGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEEFMIYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKQNLCGNLGWVDVWMPMYYFLCGKQYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.