Scaffold Ga0211490_1001869

Overview

Basic Information

• Taxon OID: 3300020297
• Scaffold ID: Ga0211490_1001869
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6286
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2087
  • Long. (^o): 26.2932
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020526	Metagenome / Metatranscriptome	223	Y
F025996	Metagenome	199	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211490_100186912	F025996	AGGAG	MTPQLEMNIGELDKSIIALSKRKLKLLQEVQQINMEIAFLRKQQEQLTNV
Ga0211490_100186917	F020526	GAG	MTDNDRVSMIEEQCEHIIALCQSYVEGDRLEDVGNIRALYEEYGEWLDTYNGMPQSDEEYTTAWMQNWCAS
Ga0211490_10018699	F082531	N/A	MIANLPSEMNDQDIEMFIKAFDDFLQHAETEIDAHEKWKEAEEYTNQFFEERAAELEVTVDYYIQEFVE