Scaffold Ga0211474_1010295

Overview

Basic Information

• Taxon OID: 3300020296
• Scaffold ID: Ga0211474_1010295
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1782
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7392
  • Long. (^o): 14.3321
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021557	Metagenome	218	N
F054939	Metagenome	139	Y
F064806	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211474_10102953	F054939	GGA	MSVYTFTFITVVSMYLAYLWGRYLTRGEIAAEVANNTLNRLEREGFIKYVINKKTGQKDFVRFE
Ga0211474_10102954	F021557	GAGG	MRLLLCALLITSNAIACDYESDDLIQYEGHIESVRVLDKKVYPYVEDTRICTMHIESRIEGEWYSSRGKYIFGSNVSEDEACSHAESRAKSVVIKEHIPETVRSKRNLSCDLTTVRNSCKIIYMNVEMPVLGTQRVKLKTCEE
Ga0211474_10102955	F064806	GAG	MFKFIFGIIVGFMIFKFDWIDDMSDAINNLGVKEAIIEKLQDDIDIDNLENGGESEYE