Scaffold Ga0211474_1007069

Overview

Basic Information

• Taxon OID: 3300020296
• Scaffold ID: Ga0211474_1007069
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2249
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7392
  • Long. (^o): 14.3321
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F009812	Metagenome	312	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211474_10070694	F000720	GAGG	MSLIKENEKVRRQIPNRMPSATFALPIDGRKVVGIVNYDVTDTGIIPMAFWVKLKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNVIGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE
Ga0211474_10070697	F009812	GGA	MTDDELEFEIEWIPEDTGAPYEAEDEVFPDVPSHTLDKWCQEKYGHTNWVRMGMMSPTDLVGNPCEFDYINGVIYFKNKILV