Scaffold Ga0211474_1001805

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211474_1001805

Scaffold Ga0211474_1001805

Overview

Basic Information
Taxon OID	3300020296 Open in IMG/M
Scaffold ID	Ga0211474_1001805 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5162
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (29.41%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_018
Coordinates	Lat. (^o)	35.7392	Long. (^o)	14.3321	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043984	Metagenome	155	Y
F059069	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211474_100180511	F043984	GGAG	MSMSIADMYQEMIDQHTELYMYRKAHKDNRSLVNPHEDILDDMSAVEVDMEYTNES
Ga0211474_100180513	F059069	N/A	MRINQYVIYTSPVKIVNDFHEACQIADDYFEKTGYIVAVEETNPEVYPEYEVA

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