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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020294 Open in IMG/M |
| Scaffold ID | Ga0211520_1006010 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2047 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_025 | |||||||
| Coordinates | Lat. (o) | 39.3757 | Long. (o) | 19.4167 | Alt. (m) | Depth (m) | 50 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002215 | Metagenome / Metatranscriptome | 582 | Y |
| F089400 | Metagenome | 109 | Y |
| F090495 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211520_10060102 | F002215 | N/A | VEVELIAAIISGSIGVFAGLTQALGKFNKKLDRRFYNIESNLDKLKNEVIHDYVLKEDFLREMQAVHTKLDRILDHLLAKN |
| Ga0211520_10060103 | F090495 | N/A | MAVQILSRRSSVLHDRPFPTRLGAAELAINNNAGEPGLFFADNTASPSTGLVKVGPISVGTAAPNNAAAGFTGNTKGESWLDTTSTYIYKIFDGAAWRTPKAVASVAAGYPSNPVDGQLHYNTTAGALYLYKLSTTSWVAV |
| Ga0211520_10060104 | F089400 | N/A | QDFSRRDSYDLYSELTKRRFPVTSVQSTKPGQVLQPDDTYSDERDIPGTFRDLGFVAINNYYQLPEYEDTSGNDTANLMYYQLRWCKHIYAAMFALKHDEGNDPINLTGAYLQNGPNITIDAVGHNLEVNTKIEITFTSGNAVSGEYTVTSVPTVDSFVVIYPFSNLTSGYCTISNLKKHDYVGAWLLEPNDKPIGEGLERFERNFEKEKEKLEAAVETLMLVKQNTSWSGQKDIIGNRGLPQSIADFDPSLLGMTLTDSVKRDADGQLNRAGKASNLTNRMITLVNKLFNKVPTLLQDIKLGIINKPLSEYTAEFEAGLIDAGDYISGIPTEDVNSVSIIDSSTYSPLTDQDTVVDSDLYINI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |