Scaffold Ga0211520_1002512

Overview

Basic Information

• Taxon OID: 3300020294
• Scaffold ID: Ga0211520_1002512
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3373
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211520_10025124	F000720	GAGG	MSLIKENKTVRKEIPNRMMSATFALPIDGRRVIGIVNYTATDTGLTPLAFWVKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPEKKQRELSTDPYAMKE
Ga0211520_10025125	F011410	GAG	MKDLSIKLEWSTSNLLVWTVLGVGIGLCIVNLVTIYNIYSVIETMWLEIQQVKETNISLFQFIEAHKNELN
Ga0211520_10025128	F003020	GGAGG	MPDISKFKSVSVSMDTHAKLQNMAQSRFEVPVSVQKVIEFLLEKETKKKNGRSNGKARR