Scaffold Ga0211520_1000065

Overview

Basic Information

• Taxon OID: 3300020294
• Scaffold ID: Ga0211520_1000065
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24663
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (72.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F011522	Metagenome / Metatranscriptome	290	Y
F026154	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211520_100006523	F011522	N/A	MKNPERYLFRAIISQAIHDAMYNGLDKYYLIDKRNAIDWLISNSVDFRTICHYAEIDPEMACKKFTAAMKLDLYTLREDQHKVLSKPRKKYKHKSKFRLTFNEQSLEQTD
Ga0211520_100006541	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLAITK
Ga0211520_100006544	F026154	AGGA	MNGIITVIRFVTYTIGGIAIRKSWNWLTTDVDPIPYTKEFEEEYAQTKAKYIRLTKLKEKHDAYRKNRRTIS