NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211520_1000011

Scaffold Ga0211520_1000011


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1000011 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49874
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005506Metagenome / Metatranscriptome398Y
F031251Metagenome / Metatranscriptome183Y
F052644Metagenome / Metatranscriptome142Y
F062824Metagenome / Metatranscriptome130Y
F101345Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211520_100001122F005506AGGGGGLIEKGDKIVKMVLLSPHEADHLYKKENGTFYWCHHRKGGDTFSIPEIQLEMFPPPPPKKVEVGTDAPHHNILERYYGKDWKPTPVEGLEDHY
Ga0211520_100001127F101345N/AMSKEDEWIMRVVINVGKRTVLCVSSDGDEKLVECDEPQEFINVVEFCKTVLDPEDIFYEEIKVARV
Ga0211520_100001144F062824AGGMSRNKVIAYADANGNCRVVIPTMDCTLSDAAVIAKDVPTSDYSVIDPADLPSKEFRSAWKYNHGSKTVTADLAKAKALTTETLEAKYLAINKENTDIQAIADMKGESASLKSNPAVPYTSINNATTIPQLEALI
Ga0211520_100001160F031251GGAMFHLAVIATTFTCIDAQILLDKMNEFNVEEETRAEMISVVIEETPHCEWDAKAD
Ga0211520_10000118F052644N/AMGSNSLTTFKDFIKVREYIYLKWDYYAQLGRMRENLSPEEELEQQACWELIRDLKGFIDNVEENYEDPDRMMDFLVDDKIIPINLFEDSK
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