Scaffold Ga0211520_1000007

Overview

Basic Information

• Taxon OID: 3300020294
• Scaffold ID: Ga0211520_1000007
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59001
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (82.93%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211520_100000739	F100955	AGG	MIKKYDEEDIATAVTNCVDSWDMDTLVMYATEMLYKEYMDRSQPIEHIDELMEEFGP
Ga0211520_100000749	F052566	AGG	MLDKHVYIRKDGGETWCYGIIEEDSNFSVVCNDENQDGIWCGNLEFTPENWDQVCKYLEENYDPQIEQLETC
Ga0211520_100000751	F050370	AGAAG	MNYIHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYNGVGHWNDEGTNTDGTTNSVQMREEVWIVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEISVRFNYDNASVL
Ga0211520_100000755	F077246	AGG	MDLSNQKLVITPESWDEIQDYIETFEYKAYATVLALMVHNYTLHQFSQMGGYAFSEWKQEYLKDVNSNKN
Ga0211520_100000756	F091977	N/A	MTLTEKKIQRMIDNYQFIRTCLLTDYNDKTIEEQMTQLYYFLRDQMEDVERIDRQDAIDNRNRLNSNGYTGKAGH