Scaffold Ga0211663_1000459

Overview

Basic Information

• Taxon OID: 3300020292
• Scaffold ID: Ga0211663_1000459
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555930-ERR599113)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7713
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9226
  • Long. (^o): -96.0932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022899	Metagenome	212	Y
F030779	Metagenome / Metatranscriptome	184	Y
F051197	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211663_100045913	F030779	GGAGG	MQITSQSGAVVIDYYPTKTRANVKLYDHVLQILTLNGKTFLKKVISTENYINDVYNRIHNFKFIDNNVDHSNLHQFITLKEVN
Ga0211663_100045916	F051197	GGAGG	MKTMTKYEWNEQFYKELVIDYNYRFPKFMEISYPNHKEESINE
Ga0211663_100045918	F022899	AGCAGG	MTQNYTRHGRSPVSKQHLESLDCLDKAYNQEGISEGDKRFYWAKIQQLTNSLTE