NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211524_1026936

Scaffold Ga0211524_1026936


Overview

Basic Information
Taxon OID3300020291 Open in IMG/M
Scaffold IDGa0211524_1026936 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015741Metagenome / Metatranscriptome252Y
F080139Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211524_10269361F080139N/ARTLWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0211524_10269362F015741AGGMFLTGCSGFPIVELIPPAFNFALGFYDHNDYYSKECLWYNEIKLNDATKKWLLESNPPEIVSKDLSKVSRNNDIYREVCKKDKSMVDKIKDKADRVLDKTLMATKEKEDG

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