Scaffold Ga0211524_1009962

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211524_1009962

Scaffold Ga0211524_1009962

Overview

Basic Information
Taxon OID	3300020291 Open in IMG/M
Scaffold ID	Ga0211524_1009962 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1808
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_037
Coordinates	Lat. (^o)	20.8188	Long. (^o)	63.6158	Alt. (m)		Depth (m)	600
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009892	Metagenome / Metatranscriptome	311	Y
F081432	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211524_10099623	F081432	N/A	MTFAPGWTQSIDTGGSREREDLASYISDTFKAINGVRPRWWDFREWSLNDLRAEAESLEDEVVASIELAKREAHERMLEANRVALIHRRAKKPLPRTFKPFANLKEILV
Ga0211524_10099624	F009892	N/A	MTRNGFLILLEQNGISLDESRMAEVNYYFNLWGDTLRQDRKSGQPHDFAAFITWMKKA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.